Variant report

Variant	rs7558831
Chromosome Location	chr2:168309526-168309527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10048770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166160	1.00[ASN][1000 genomes]
rs10169923	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177399	0.91[EUR][1000 genomes]
rs10183035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186995	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187544	0.95[EUR][1000 genomes]
rs10193628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203387	0.95[EUR][1000 genomes]
rs10205907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206206	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206412	0.97[EUR][1000 genomes]
rs10803824	0.83[EUR][1000 genomes]
rs12104569	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386818	1.00[ASN][1000 genomes]
rs13405810	0.97[EUR][1000 genomes]
rs13413030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419259	0.95[EUR][1000 genomes]
rs1357606	0.84[EUR][1000 genomes]
rs1403895	0.84[EUR][1000 genomes]
rs1523888	0.84[EUR][1000 genomes]
rs2030657	0.84[EUR][1000 genomes]
rs2222504	0.84[EUR][1000 genomes]
rs2617383	0.84[EUR][1000 genomes]
rs56875650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57979918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432996	0.91[EUR][1000 genomes]
rs6720269	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720884	0.92[EUR][1000 genomes]
rs6721252	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722016	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725730	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6729076	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731777	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739277	0.98[EUR][1000 genomes]
rs6747599	0.95[EUR][1000 genomes]
rs6754396	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756322	0.84[EUR][1000 genomes]
rs73023882	1.00[EUR][1000 genomes]
rs7567369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594125	0.91[EUR][1000 genomes]
rs940314	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168308400-168322400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:168308600-168310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:168308600-168311600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:168308600-168312600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:168308600-168325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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