Variant report

Variant	rs13386818
Chromosome Location	chr2:168336445-168336446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10048770	1.00[ASN][1000 genomes]
rs10166160	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10169923	1.00[ASN][1000 genomes]
rs10183035	1.00[ASN][1000 genomes]
rs10186995	1.00[ASN][1000 genomes]
rs10193628	1.00[ASN][1000 genomes]
rs10205907	1.00[ASN][1000 genomes]
rs10206206	1.00[ASN][1000 genomes]
rs12104569	1.00[ASN][1000 genomes]
rs13413030	1.00[ASN][1000 genomes]
rs4383298	0.82[AFR][1000 genomes]
rs56875650	1.00[ASN][1000 genomes]
rs57979918	1.00[ASN][1000 genomes]
rs6720269	1.00[ASN][1000 genomes]
rs6721252	1.00[ASN][1000 genomes]
rs6721528	1.00[ASN][1000 genomes]
rs6722016	1.00[ASN][1000 genomes]
rs6725601	0.85[EUR][1000 genomes]
rs6725730	1.00[ASN][1000 genomes]
rs6726976	1.00[ASN][1000 genomes]
rs6729076	1.00[ASN][1000 genomes]
rs6731777	1.00[ASN][1000 genomes]
rs6754396	1.00[ASN][1000 genomes]
rs7558831	1.00[ASN][1000 genomes]
rs7567369	1.00[ASN][1000 genomes]
rs7585935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168328600-168336800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168332600-168336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:168332600-168337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:168332800-168337000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:168332800-168337400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:168333000-168337200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:168333200-168337000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:168334000-168336600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:168335600-168336600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:168335600-168336800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:168335600-168336800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:168336000-168338400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:168336000-168338400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:168336000-168338600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:168336200-168337000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:168336200-168337800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:168336200-168338200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:168336200-168338200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr2:168336200-168338800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr2:168336400-168337200	Enhancers	Pancreas	Pancrea
21	chr2:168336400-168337400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:168336400-168337600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr2:168336400-168337600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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