Variant report

Variant	rs73972275
Chromosome Location	chr2:168324599-168324600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10177399	0.81[ASN][1000 genomes]
rs1403893	0.94[ASN][1000 genomes]
rs1523885	0.89[ASN][1000 genomes]
rs1523886	0.82[ASN][1000 genomes]
rs1523887	0.82[ASN][1000 genomes]
rs1880171	0.82[ASN][1000 genomes]
rs2140498	0.85[ASN][1000 genomes]
rs2689843	0.82[ASN][1000 genomes]
rs2689845	0.82[ASN][1000 genomes]
rs2689846	0.82[ASN][1000 genomes]
rs2689847	0.82[ASN][1000 genomes]
rs2689848	0.82[ASN][1000 genomes]
rs4130760	0.94[ASN][1000 genomes]
rs59534092	0.94[ASN][1000 genomes]
rs6747382	0.85[ASN][1000 genomes]
rs73972270	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73972274	0.94[ASN][1000 genomes]
rs73972276	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168308600-168325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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