Variant report

Variant	rs2690361
Chromosome Location	chr7:109234088-109234089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1621851	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624892	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627467	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721427	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721429	1.00[ASN][1000 genomes]
rs1721437	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721439	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721927	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721930	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1721935	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690353	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690354	1.00[ASN][1000 genomes]
rs2690363	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73428983	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109221200-109234400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:109228400-109237800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:109229600-109234400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:109230800-109237400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:109230800-109237800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:109231800-109234400	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr7:109233200-109237400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr7:109233800-109237400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr7:109233800-109237400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:109234000-109234600	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr7:109234000-109235600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:109234000-109237400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:109234000-109238600	Active TSS	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links