Variant report

Variant	rs73428983
Chromosome Location	chr7:109245465-109245466
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11770555	0.87[EUR][1000 genomes]
rs1621851	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624892	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1627467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721429	1.00[ASN][1000 genomes]
rs1721437	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721439	1.00[ASN][1000 genomes]
rs1721927	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1721930	0.81[EUR][1000 genomes]
rs1721935	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690354	1.00[ASN][1000 genomes]
rs2690361	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690363	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801155	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1017184	chr7:109240101-109350011	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3386276	chr7:109245318-109245671	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109240800-109261800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:109244800-109250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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