Variant report

Variant	rs269123
Chromosome Location	chr1:112584332-112584333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11102378	0.83[AMR][1000 genomes]
rs17029299	1.00[MEX][hapmap]
rs187918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs190584	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2819207	0.83[AMR][1000 genomes]
rs3008537	1.00[MEX][hapmap]
rs3860209	0.83[AMR][1000 genomes]
rs593260	1.00[MEX][hapmap]
rs61706163	0.83[AMR][1000 genomes]
rs659425	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542651	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv831059	chr1:112569062-112724725	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112582600-112585400	Enhancers	Placenta	Placenta
2	chr1:112582800-112587800	Enhancers	Fetal Stomach	stomach
3	chr1:112583000-112584800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:112583200-112584600	Enhancers	Colon Smooth Muscle	Colon
5	chr1:112583200-112584600	Enhancers	Fetal Heart	heart
6	chr1:112583400-112584400	Enhancers	Right Ventricle	heart
7	chr1:112583400-112584600	Enhancers	GM12878-XiMat	blood
8	chr1:112583400-112585000	Enhancers	Spleen	Spleen
9	chr1:112583600-112584600	Enhancers	Fetal Lung	lung
10	chr1:112584000-112584600	Enhancers	Fetal Muscle Trunk	muscle
11	chr1:112584000-112584800	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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