Variant report

Variant	rs2691539
Chromosome Location	chr7:77963846-77963847
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10254017	0.94[ASN][1000 genomes]
rs12154641	0.95[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12705409	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1860538	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1990370	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2075013	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2075014	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2159511	0.81[CEU][hapmap];0.81[YRI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2534646	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2534647	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2534648	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2534649	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs2691513	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2691530	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2691531	0.97[ASN][1000 genomes]
rs2691532	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2691533	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2691535	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2691538	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2691540	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2691544	0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2691545	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2691546	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4371942	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4374924	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4556031	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6976483	0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs798308	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs798309	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs798310	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs798314	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs798317	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77946200-77976000	Weak transcription	Aorta	Aorta
2	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:77956800-77964400	Weak transcription	Ovary	ovary
4	chr7:77957000-77975800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:77957200-77973200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:77957200-77975800	Weak transcription	Brain Substantia Nigra	brain
7	chr7:77957600-77974800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:77957600-77976000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:77957600-77978600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
11	chr7:77961400-77964200	Enhancers	Fetal Intestine Small	intestine
12	chr7:77962800-77964200	Enhancers	HepG2	liver
13	chr7:77963200-77964400	Weak transcription	Fetal Heart	heart
14	chr7:77963400-77964400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:77963600-77964400	Enhancers	Fetal Lung	lung
16	chr7:77963800-77964000	Enhancers	HUES64 Cell Line	embryonic stem cell

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