Variant report

Variant	rs6976483
Chromosome Location	chr7:77979128-77979129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12154641	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12705409	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1860538	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1990370	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2075013	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2075014	0.90[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2159511	0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs2534646	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2534647	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap]
rs2534648	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs2534649	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs2691513	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2691530	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs2691533	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2691535	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.80[ASN][1000 genomes]
rs2691538	0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs2691539	0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs2691540	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2691544	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2691545	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2691546	0.85[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs4371942	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs4374924	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4556031	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs798308	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs798309	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs798310	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs798314	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs798317	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77953600-77986600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:77958000-77979800	Weak transcription	Fetal Brain Female	brain
3	chr7:77964000-77981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:77974000-77980000	Weak transcription	Pancreas	Pancrea
6	chr7:77975600-77992000	Weak transcription	Ovary	ovary
7	chr7:77976000-77979600	Weak transcription	Fetal Intestine Small	intestine
8	chr7:77976800-77980600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:77977400-77979600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:77977400-77979800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:77977800-77984800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:77978400-77979800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:77978400-77979800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:77978600-77980200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:77978600-77980800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:77978600-77982200	Enhancers	Brain Anterior Caudate	brain
17	chr7:77978800-77980000	Enhancers	Fetal Heart	heart
18	chr7:77978800-77980200	Enhancers	Brain Angular Gyrus	brain
19	chr7:77979000-77981600	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links