Variant report

Variant	rs2692879
Chromosome Location	chr6:37013127-37013128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10947654	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947655	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1224492	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1224493	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1724092	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1724093	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1753297	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1753299	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2692878	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4714033	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6457968	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457969	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457970	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917839	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922840	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940573	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940597	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7751883	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752115	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831481	0.82[ASN][1000 genomes]
rs831482	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831483	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831485	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831486	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831488	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs831490	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831508	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs864396	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs864590	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs913502	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357233	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380636	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394399	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470464	0.81[ASN][1000 genomes]
rs9765964	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv3352125	chr6:37011324-37013522	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv3354575	chr6:37011774-37013322	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
6	nsv981136	chr6:37012733-37013785	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36993800-37018200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36997400-37013800	Weak transcription	Esophagus	oesophagus
3	chr6:37000400-37015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37002400-37014400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:37006800-37016200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:37006800-37016800	Weak transcription	Right Atrium	heart
7	chr6:37007800-37015200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:37008000-37013800	Weak transcription	Pancreas	Pancrea
9	chr6:37008000-37015200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:37008000-37015600	Weak transcription	GM12878-XiMat	blood
11	chr6:37008200-37015400	Weak transcription	Primary B cells from cord blood	blood
12	chr6:37008600-37015000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:37010000-37013200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:37010000-37013400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:37010000-37013600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:37010000-37013800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:37010200-37013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:37010200-37013600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:37010200-37013800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:37010400-37013200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:37010400-37013200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:37010400-37013400	Weak transcription	Dnd41	blood
23	chr6:37010400-37013600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:37010400-37013600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:37010800-37013200	Weak transcription	K562	blood

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