Variant report

Variant	rs9394399
Chromosome Location	chr6:37019616-37019617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37019030..37019973-chr6:37175557..37176474,5	MCF-7	breast:
2	chr6:37013215..37030579-chr6:37135643..37146812,60	K562	blood:
3	chr6:37019209..37019948-chr6:37175488..37176263,3	MCF-7	breast:
4	chr6:37015361..37021664-chr6:37022049..37027809,14	K562	blood:
5	chr6:37018986..37019867-chr6:37177959..37178857,6	MCF-7	breast:
6	chr6:37018979..37019899-chr6:37175550..37176433,4	K562	blood:
7	chr6:37013215..37030665-chr6:37134901..37148307,66	K562	blood:
8	chr6:37017164..37020087-chr6:37281669..37283613,2	K562	blood:
9	chr6:37018990..37019901-chr6:37139671..37140493,3	MCF-7	breast:
10	chr6:37018926..37020185-chr6:37137216..37139118,7	K562	blood:
11	chr6:37014868..37029815-chr6:37135131..37143827,44	MCF-7	breast:
12	chr6:37017932..37019663-chr6:37069414..37072213,2	K562	blood:
13	chr6:36993956..36998841-chr6:37016055..37021281,5	K562	blood:
14	chr6:37018873..37020084-chr6:37139552..37140842,17	MCF-7	breast:
15	chr6:37016328..37032410-chr6:37132402..37145966,91	MCF-7	breast:
16	chr6:36840111..36842444-chr6:37018601..37020201,2	MCF-7	breast:
17	chr6:37019049..37019836-chr6:37099119..37099722,2	MCF-7	breast:
18	chr6:37018587..37019913-chr6:37177834..37178576,6	K562	blood:
19	chr6:37018452..37020130-chr6:37071233..37072925,2	K562	blood:
20	chr6:37019401..37019905-chr6:37140779..37141669,2	K562	blood:
21	chr6:37004960..37006542-chr6:37018559..37021481,2	K562	blood:
22	chr6:36986109..36986997-chr6:37018972..37019835,3	MCF-7	breast:
23	chr6:37018930..37019983-chr6:37139473..37140598,15	K562	blood:
24	chr6:36993138..36995327-chr6:37018553..37020815,2	MCF-7	breast:
25	chr6:37018618..37019781-chr6:37138024..37138822,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10947654	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10947655	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1224492	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1224493	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1724092	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1724093	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753297	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753299	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2692878	0.84[ASN][1000 genomes]
rs2692879	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4714033	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457968	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457969	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457970	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917839	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6922840	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940573	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940597	0.86[ASN][1000 genomes]
rs7751883	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752115	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs831482	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831483	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831485	0.90[ASN][1000 genomes]
rs831486	0.90[ASN][1000 genomes]
rs831488	0.84[ASN][1000 genomes]
rs831490	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831508	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs864396	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs864590	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs913502	0.84[ASN][1000 genomes]
rs9357233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380636	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9765964	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37013800-37020000	Enhancers	Pancreas	Pancrea
2	chr6:37013800-37020200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:37013800-37020400	Enhancers	Fetal Thymus	thymus
4	chr6:37014800-37020000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:37015200-37020400	Enhancers	Fetal Muscle Leg	muscle
6	chr6:37015800-37020200	Enhancers	Spleen	Spleen
7	chr6:37016000-37020200	Flanking Active TSS	K562	blood
8	chr6:37016000-37020400	Enhancers	Placenta	Placenta
9	chr6:37016800-37019800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:37016800-37019800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:37016800-37019800	Flanking Active TSS	Dnd41	blood
12	chr6:37017000-37020000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr6:37017200-37027200	Weak transcription	NH-A	brain
14	chr6:37017800-37020000	Enhancers	Thymus	Thymus
15	chr6:37018000-37019800	Enhancers	Brain Germinal Matrix	brain
16	chr6:37018200-37019800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:37018200-37019800	Enhancers	Gastric	stomach
18	chr6:37018200-37020200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37018200-37021400	Enhancers	Fetal Intestine Small	intestine
20	chr6:37018400-37019800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:37018400-37019800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:37018400-37019800	Enhancers	Brain Anterior Caudate	brain
23	chr6:37018400-37019800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:37018400-37019800	Enhancers	Left Ventricle	heart
25	chr6:37018400-37019800	Enhancers	Lung	lung
26	chr6:37018400-37020000	Enhancers	Fetal Heart	heart
27	chr6:37018400-37020200	Enhancers	Esophagus	oesophagus
28	chr6:37018400-37020200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr6:37018400-37020400	Enhancers	Liver	Liver
30	chr6:37018400-37020400	Enhancers	Right Ventricle	heart
31	chr6:37018600-37019800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:37018600-37019800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr6:37018600-37019800	Enhancers	GM12878-XiMat	blood
34	chr6:37018600-37020200	Enhancers	Adipose Nuclei	Adipose
35	chr6:37018600-37020200	Enhancers	Colon Smooth Muscle	Colon
36	chr6:37018600-37020400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:37018600-37020400	Enhancers	Primary B cells from peripheral blood	blood
38	chr6:37018600-37020400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:37018600-37020400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:37018600-37020400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:37018800-37019800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:37018800-37019800	Enhancers	NHDF-Ad	bronchial
43	chr6:37018800-37020000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:37018800-37020000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:37018800-37020000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr6:37018800-37020000	Enhancers	Brain Hippocampus Middle	brain
47	chr6:37018800-37020000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:37018800-37020400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:37018800-37020400	Flanking Active TSS	HepG2	liver
50	chr6:37019000-37019800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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