Variant report

Variant	rs2693400
Chromosome Location	chr7:146242619-146242620
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1068271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980615	0.90[YRI][hapmap]
rs11981917	0.90[YRI][hapmap]
rs1405172	0.90[YRI][hapmap]
rs1405173	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405174	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405175	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405176	0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1522224	0.90[YRI][hapmap]
rs2693390	0.90[YRI][hapmap]
rs2693393	0.80[YRI][hapmap]
rs2693399	0.90[YRI][hapmap]
rs2693410	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs344447	1.00[AMR][1000 genomes]
rs344481	1.00[AMR][1000 genomes]
rs344483	1.00[AMR][1000 genomes]
rs344485	1.00[AMR][1000 genomes]
rs347174	0.90[YRI][hapmap]
rs347182	0.90[YRI][hapmap]
rs347207	0.90[YRI][hapmap]
rs347210	0.90[YRI][hapmap]
rs347221	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs384474	1.00[AMR][1000 genomes]
rs6948630	0.90[YRI][hapmap]
rs700286	1.00[AMR][1000 genomes]
rs700288	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs700289	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs700292	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73468424	1.00[AMR][1000 genomes]
rs73468425	1.00[AMR][1000 genomes]
rs801928	1.00[AMR][1000 genomes]
rs801930	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801931	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801942	0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801944	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801947	1.00[AMR][1000 genomes]
rs801948	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs801964	1.00[YRI][hapmap]
rs801969	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801999	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs802002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs802011	0.90[YRI][hapmap]
rs802015	0.89[YRI][hapmap]
rs802016	0.90[YRI][hapmap]
rs802018	0.90[YRI][hapmap]
rs811910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs940959	1.00[CHB][hapmap]
rs940965	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv608931	chr7:146189057-146274427	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv608932	chr7:146189652-146244207	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv465186	chr7:146192877-146254660	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv608933	chr7:146192877-146254660	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv608934	chr7:146195452-146267257	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv1019592	chr7:146216403-146254660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv869938	chr7:146221575-146254778	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1018729	chr7:146222177-146254660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1032928	chr7:146222177-146260292	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv515777	chr7:146225448-146254660	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv465187	chr7:146225448-146254660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv465188	chr7:146225448-146254660	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv465189	chr7:146225448-146254660	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv608935	chr7:146225448-146254660	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv465190	chr7:146225448-146257321	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv608936	chr7:146225448-146257321	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv1017143	chr7:146226298-146254660	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv1032745	chr7:146226298-146258838	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv1030382	chr7:146226298-146259721	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv1028223	chr7:146226298-146267257	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv1028701	chr7:146226298-146269716	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
32	nsv915984	chr7:146226394-146254734	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	nsv608937	chr7:146227624-146254660	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv608938	chr7:146227624-146264567	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	nsv1016943	chr7:146231122-146254660	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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