Variant report

Variant	rs347221
Chromosome Location	chr7:146322723-146322724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:283786..286287-chr7:146321086..146324044,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167930	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1068271	1.00[AMR][1000 genomes]
rs11980615	1.00[YRI][hapmap]
rs11981917	1.00[YRI][hapmap]
rs1405172	1.00[YRI][hapmap]
rs1405173	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1405174	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1405175	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1405176	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1522224	1.00[YRI][hapmap]
rs2693390	1.00[YRI][hapmap]
rs2693393	0.90[YRI][hapmap]
rs2693399	0.81[YRI][hapmap]
rs2693400	0.90[YRI][hapmap]
rs2693410	1.00[AMR][1000 genomes]
rs344443	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs344447	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs344481	1.00[AMR][1000 genomes]
rs344483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs344485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs347174	1.00[YRI][hapmap]
rs347182	1.00[YRI][hapmap]
rs347207	1.00[YRI][hapmap]
rs347210	1.00[YRI][hapmap]
rs347224	0.81[AFR][1000 genomes]
rs384474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948630	1.00[YRI][hapmap]
rs700286	1.00[AMR][1000 genomes]
rs700288	1.00[AMR][1000 genomes]
rs700289	1.00[AMR][1000 genomes]
rs700292	1.00[AMR][1000 genomes]
rs73468424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73468425	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801928	1.00[AMR][1000 genomes]
rs801930	1.00[AMR][1000 genomes]
rs801931	1.00[AMR][1000 genomes]
rs801942	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs801944	1.00[AMR][1000 genomes]
rs801945	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs801947	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs801948	1.00[AMR][1000 genomes]
rs801954	0.90[YRI][hapmap]
rs801958	0.88[YRI][hapmap]
rs801959	0.90[YRI][hapmap]
rs801961	0.90[YRI][hapmap]
rs801962	0.90[YRI][hapmap]
rs801963	0.90[YRI][hapmap]
rs801964	0.82[YRI][hapmap]
rs801968	0.90[YRI][hapmap]
rs801969	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs801999	1.00[AMR][1000 genomes]
rs802002	1.00[AMR][1000 genomes]
rs802011	1.00[YRI][hapmap]
rs802015	1.00[YRI][hapmap]
rs802016	1.00[YRI][hapmap]
rs802018	1.00[YRI][hapmap]
rs811910	1.00[AMR][1000 genomes]
rs940965	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv1025948	chr7:146252115-146393151	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv948895	chr7:146260214-146348562	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2761376	chr7:146287876-146334647	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1018605	chr7:146287876-146448400	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv889392	chr7:146292088-146446767	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146321800-146323000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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