Variant report

Variant	rs801963
Chromosome Location	chr7:146221062-146221063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1068271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1068272	0.96[AFR][1000 genomes]
rs11980615	0.90[YRI][hapmap]
rs11981917	0.90[YRI][hapmap]
rs1405172	0.90[YRI][hapmap]
rs1405173	0.90[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405174	0.90[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405175	0.90[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405176	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1522224	0.90[YRI][hapmap]
rs2693390	0.90[YRI][hapmap]
rs2693393	0.80[YRI][hapmap]
rs2693399	0.90[YRI][hapmap]
rs2693410	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs344447	1.00[AMR][1000 genomes]
rs344481	1.00[AMR][1000 genomes]
rs344483	1.00[AMR][1000 genomes]
rs344485	1.00[AMR][1000 genomes]
rs347174	0.90[YRI][hapmap]
rs347182	0.90[YRI][hapmap]
rs347207	0.90[YRI][hapmap]
rs347210	0.90[YRI][hapmap]
rs347221	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs384474	1.00[AMR][1000 genomes]
rs6948630	0.90[YRI][hapmap]
rs700286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs700288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs700289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs700292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73468424	1.00[AMR][1000 genomes]
rs73468425	1.00[AMR][1000 genomes]
rs801928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801942	0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801945	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801947	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801948	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801954	1.00[YRI][hapmap]
rs801958	1.00[YRI][hapmap]
rs801959	1.00[YRI][hapmap]
rs801961	1.00[YRI][hapmap]
rs801962	1.00[YRI][hapmap]
rs801964	1.00[YRI][hapmap]
rs801968	1.00[YRI][hapmap]
rs801969	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801999	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs802002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs802011	0.90[YRI][hapmap]
rs802015	0.89[YRI][hapmap]
rs802016	0.90[YRI][hapmap]
rs802018	0.90[YRI][hapmap]
rs811910	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs940965	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv608931	chr7:146189057-146274427	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv608932	chr7:146189652-146244207	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv465186	chr7:146192877-146254660	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv608933	chr7:146192877-146254660	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv608934	chr7:146195452-146267257	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1019592	chr7:146216403-146254660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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