Variant report
Variant | rs269399 |
---|---|
Chromosome Location | chr1:67334948-67334949 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:67333615..67337326-chr1:67338154..67341461,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000152763 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs12239035 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12239074 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1280338 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1925399 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1925400 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1925401 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1925402 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1925403 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1925404 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1925405 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1925406 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1931297 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2147835 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs269395 | 0.81[EUR][1000 genomes] |
rs269401 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs269402 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs269403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs269405 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2991353 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2991354 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2991359 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4255358 | 0.82[EUR][1000 genomes] |
rs55858354 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs56400880 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs573490 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61467716 | 0.87[EUR][1000 genomes] |
rs6699606 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72671671 | 0.82[EUR][1000 genomes] |
rs72671673 | 0.83[EUR][1000 genomes] |
rs72671674 | 0.80[EUR][1000 genomes] |
rs72671675 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72671677 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72671679 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72671680 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72671682 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs72671685 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7552770 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869413 | chr1:67082512-67414286 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
2 | nsv830093 | chr1:67173594-67348264 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv546443 | chr1:67268642-67352960 | Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv871738 | chr1:67268642-67375206 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv871259 | chr1:67275027-67375206 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:67276800-67336000 | Weak transcription | Aorta | Aorta |
2 | chr1:67281600-67335800 | Weak transcription | Ovary | ovary |
3 | chr1:67319400-67335400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
4 | chr1:67329800-67335000 | Weak transcription | Left Ventricle | heart |