Variant report

Variant	rs72671673
Chromosome Location	chr1:67319004-67319005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12239035	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12239074	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1280338	0.83[EUR][1000 genomes]
rs1925404	0.81[AMR][1000 genomes]
rs1925405	0.81[AMR][1000 genomes]
rs1925406	0.81[AMR][1000 genomes]
rs1931297	0.81[AMR][1000 genomes]
rs269399	0.83[EUR][1000 genomes]
rs269401	0.81[EUR][1000 genomes]
rs269402	0.83[EUR][1000 genomes]
rs269403	0.83[EUR][1000 genomes]
rs573490	0.83[EUR][1000 genomes]
rs6699606	0.83[EUR][1000 genomes]
rs72671671	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72671674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72671675	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671677	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671679	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671680	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72671682	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546443	chr1:67268642-67352960	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871738	chr1:67268642-67375206	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv871259	chr1:67275027-67375206	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv871177	chr1:67279194-67320816	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67276800-67336000	Weak transcription	Aorta	Aorta
2	chr1:67281600-67335800	Weak transcription	Ovary	ovary
3	chr1:67318400-67321000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:67318600-67320200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:67318800-67319400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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