Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57656384..57658346-chr5:57754489..57756599,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs151915	0.94[EUR][1000 genomes]
rs151921	0.89[EUR][1000 genomes]
rs151922	0.88[EUR][1000 genomes]
rs151923	0.89[EUR][1000 genomes]
rs154681	0.94[EUR][1000 genomes]
rs244698	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs244700	0.94[EUR][1000 genomes]
rs2548599	0.93[EUR][1000 genomes]
rs2652499	0.92[EUR][1000 genomes]
rs2662618	0.92[EUR][1000 genomes]
rs26979	0.96[EUR][1000 genomes]
rs27212	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27604	0.96[EUR][1000 genomes]
rs27917	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36645	0.87[EUR][1000 genomes]
rs399282	0.94[EUR][1000 genomes]
rs412028	0.94[EUR][1000 genomes]
rs451022	0.94[EUR][1000 genomes]
rs696189	0.89[EUR][1000 genomes]
rs697087	0.92[EUR][1000 genomes]
rs697088	0.94[EUR][1000 genomes]
rs702586	0.92[EUR][1000 genomes]
rs834935	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3440932	chr5:57656620-57659168	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57657000-57661600	Weak transcription	Fetal Heart	heart

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