Variant report

Variant	rs2699002
Chromosome Location	chr4:160370346-160370347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10434106	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434161	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830457	0.87[AFR][1000 genomes]
rs2699001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699021	0.97[ASN][1000 genomes]
rs2699022	1.00[ASN][1000 genomes]
rs2707680	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707684	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707685	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851801	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846236	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856994	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691566	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691567	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368200-160372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160368200-160376600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:160368400-160390200	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links