Variant report

Variant	rs3856994
Chromosome Location	chr4:160365744-160365745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10434106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699001	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699002	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699021	0.97[ASN][1000 genomes]
rs2699022	1.00[ASN][1000 genomes]
rs2707680	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707683	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707686	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707688	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707689	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846236	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691566	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691567	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691568	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160350600-160367800	Weak transcription	HSMM	muscle
2	chr4:160357600-160367000	Weak transcription	NH-A	brain
3	chr4:160362800-160365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160362800-160366800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:160364200-160368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:160364400-160365800	Weak transcription	HMEC	breast
7	chr4:160364400-160367600	Weak transcription	NHEK	skin
8	chr4:160364600-160367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:160364800-160368000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:160365400-160366200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:160365400-160366200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:160365400-160366200	Enhancers	Left Ventricle	heart
13	chr4:160365600-160366800	Weak transcription	Fetal Lung	lung
14	chr4:160365600-160367000	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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