Variant report

Variant	rs2699869
Chromosome Location	chr3:133032892-133032893
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10428109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10428218	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10446319	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10446320	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10512895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10935053	0.82[CHB][hapmap]
rs10935055	0.89[ASN][1000 genomes]
rs10935056	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10935057	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10935058	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11706654	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11708546	0.81[ASN][1000 genomes]
rs11709944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11710126	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11711460	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11715376	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11718689	0.89[ASN][1000 genomes]
rs11720441	0.93[ASN][1000 genomes]
rs11916334	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11917647	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11919010	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11919147	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11919306	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11922161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11922891	1.00[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11922977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11925164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11925242	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11926108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11926667	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12152547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12496099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12630271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12633881	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12637903	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1349297	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1355776	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1513361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1513363	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1513373	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16840188	0.91[ASN][1000 genomes]
rs16840195	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16840198	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16840213	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16840222	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16840226	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16840271	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17297754	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17298063	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1877584	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1877586	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1881919	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1920020	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1949220	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2122399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2370051	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28883687	0.93[ASN][1000 genomes]
rs35224447	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35753560	0.91[ASN][1000 genomes]
rs3849404	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs3849405	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs3849406	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3897878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3897879	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3914306	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3953104	0.82[JPT][hapmap]
rs4089503	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4306857	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs4459902	0.93[ASN][1000 genomes]
rs4459903	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4507250	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4541408	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4600815	0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4642122	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854577	0.81[ASN][1000 genomes]
rs4854579	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4854705	0.87[ASN][1000 genomes]
rs4854706	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4854707	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4854712	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4854713	0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs55694539	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55716424	0.89[ASN][1000 genomes]
rs55769323	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55794041	0.89[ASN][1000 genomes]
rs55854402	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55856984	0.81[ASN][1000 genomes]
rs55872831	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55929614	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56188630	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56226608	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56290147	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56940649	0.89[ASN][1000 genomes]
rs57116584	0.91[ASN][1000 genomes]
rs57420262	0.89[ASN][1000 genomes]
rs57702813	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59007455	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59114325	0.82[ASN][1000 genomes]
rs59204212	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60078509	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60141688	0.98[ASN][1000 genomes]
rs60990354	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61458354	0.91[ASN][1000 genomes]
rs62278973	0.89[ASN][1000 genomes]
rs62278976	0.94[ASN][1000 genomes]
rs62279002	0.91[ASN][1000 genomes]
rs62279005	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62279009	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62279012	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62279014	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62279015	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62279016	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62280355	0.80[ASN][1000 genomes]
rs62280863	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6439392	0.82[JPT][hapmap]
rs6439400	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs66973086	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6766263	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6774247	0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6788390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6805892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6809033	0.82[CHB][hapmap]
rs713441	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7617947	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7619504	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7622617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7624858	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7625157	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7626326	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7627254	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7632905	0.93[ASN][1000 genomes]
rs7634139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7636781	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7639076	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7641051	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7644980	0.82[JPT][hapmap]
rs7647133	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7648973	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs766952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs769097	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs938237	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9809358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9866337	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757011	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2759179	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1014344	chr3:133024614-133042938	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
2	chr3:133021000-133037600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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