Variant report

Variant	rs59114325
Chromosome Location	chr3:133028648-133028649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10428109	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10428218	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10512895	0.82[ASN][1000 genomes]
rs10935056	0.82[ASN][1000 genomes]
rs10935058	0.82[AMR][1000 genomes]
rs11715376	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11917647	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11919010	0.80[ASN][1000 genomes]
rs11919147	0.82[AMR][1000 genomes]
rs11919306	0.82[AMR][1000 genomes]
rs11922891	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11922977	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11926108	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11926667	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12152547	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12496099	0.82[ASN][1000 genomes]
rs12633881	0.82[AMR][1000 genomes]
rs1513373	0.81[AMR][1000 genomes]
rs16840195	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16840198	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16840213	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16840222	0.81[ASN][1000 genomes]
rs16840226	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16840271	0.81[AMR][1000 genomes]
rs17297754	0.82[ASN][1000 genomes]
rs17298063	0.82[ASN][1000 genomes]
rs1877584	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1877586	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1881919	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1920020	0.81[AMR][1000 genomes]
rs2370051	0.82[ASN][1000 genomes]
rs2699869	0.82[ASN][1000 genomes]
rs35224447	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3849406	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3897879	0.82[ASN][1000 genomes]
rs3914306	0.82[AMR][1000 genomes]
rs4089503	0.82[AMR][1000 genomes]
rs4507250	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4642122	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4854579	0.82[ASN][1000 genomes]
rs4854712	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55694539	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55769323	0.82[ASN][1000 genomes]
rs55854402	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55872831	0.82[AMR][1000 genomes]
rs55929614	0.82[ASN][1000 genomes]
rs56188630	0.82[AMR][1000 genomes]
rs56226608	0.81[AMR][1000 genomes]
rs56290147	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57702813	0.82[ASN][1000 genomes]
rs59007455	0.82[ASN][1000 genomes]
rs59204212	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60078509	0.82[AMR][1000 genomes]
rs60141688	0.82[ASN][1000 genomes]
rs60990354	0.82[ASN][1000 genomes]
rs62279005	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62279009	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62279014	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62279015	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62279016	0.82[ASN][1000 genomes]
rs62280863	0.81[AMR][1000 genomes]
rs66973086	0.82[ASN][1000 genomes]
rs6766263	0.80[ASN][1000 genomes]
rs6805892	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs713441	0.80[ASN][1000 genomes]
rs7619504	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7625157	0.82[AMR][1000 genomes]
rs7626326	0.80[ASN][1000 genomes]
rs7636781	0.82[AMR][1000 genomes]
rs7639076	0.82[ASN][1000 genomes]
rs7647133	0.81[AMR][1000 genomes]
rs938237	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4016	chr3:133015463-133032477	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2757011	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2759179	chr3:133020950-133032892	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1014344	chr3:133024614-133042938	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung
2	chr3:133021000-133031800	Weak transcription	HSMM	muscle
3	chr3:133021000-133037600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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