Variant report

Variant	rs270065
Chromosome Location	chr8:3286314-3286315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1161516	0.91[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs166582	0.91[CEU][hapmap]
rs17066135	0.91[CEU][hapmap]
rs17322547	0.83[CEU][hapmap]
rs2134569	0.91[CEU][hapmap]
rs270067	0.91[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs270073	0.91[CEU][hapmap]
rs270076	0.91[CEU][hapmap]
rs270077	0.91[CEU][hapmap]
rs270078	0.90[JPT][hapmap]
rs270079	0.81[CHD][hapmap]
rs270081	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs270085	0.83[CEU][hapmap];0.86[GIH][hapmap]
rs270086	0.91[CEU][hapmap]
rs270089	0.91[CEU][hapmap];0.86[GIH][hapmap]
rs270090	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs270091	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs2922086	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2938236	0.91[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.94[YRI][hapmap]
rs55804612	0.86[EUR][1000 genomes]
rs56066772	0.91[EUR][1000 genomes]
rs56209533	0.81[EUR][1000 genomes]
rs57968223	0.91[EUR][1000 genomes]
rs58936282	0.86[EUR][1000 genomes]
rs59495626	0.91[EUR][1000 genomes]
rs59846378	0.91[EUR][1000 genomes]
rs66515295	0.91[EUR][1000 genomes]
rs66714985	0.91[EUR][1000 genomes]
rs67788127	0.84[ASN][1000 genomes]
rs68110968	0.89[EUR][1000 genomes]
rs68167445	0.91[EUR][1000 genomes]
rs73174833	0.91[EUR][1000 genomes]
rs73174844	0.86[EUR][1000 genomes]
rs73174846	0.89[EUR][1000 genomes]
rs73174848	0.81[EUR][1000 genomes]
rs968104	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033589	chr8:2498609-3305100	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018407	chr8:2724294-3305100	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv915568	chr8:2725834-3291312	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025408	chr8:2733604-3302447	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1033242	chr8:3283564-3304283	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv609736	chr8:3284183-3295628	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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