Variant report

Variant	rs270067
Chromosome Location	chr8:3283564-3283565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1161516	0.83[CEU][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes]
rs166582	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs17066135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17322547	0.91[CEU][hapmap]
rs17394506	0.85[MEX][hapmap]
rs2134569	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs270065	0.91[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs270073	1.00[CEU][hapmap]
rs270076	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs270077	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs270084	0.95[JPT][hapmap]
rs270085	0.91[CEU][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.88[TSI][hapmap]
rs270086	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs270089	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap]
rs270090	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs270091	0.91[CEU][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs270092	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2922086	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2938236	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs55798050	0.88[EUR][1000 genomes]
rs55804612	0.95[EUR][1000 genomes]
rs56066772	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56209533	0.90[EUR][1000 genomes]
rs57968223	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58936282	0.95[EUR][1000 genomes]
rs59495626	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59846378	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66515295	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66714985	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68110968	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs68167445	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73174833	1.00[EUR][1000 genomes]
rs73174844	0.95[EUR][1000 genomes]
rs73174846	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73174848	0.90[EUR][1000 genomes]
rs968104	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033589	chr8:2498609-3305100	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018407	chr8:2724294-3305100	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv915568	chr8:2725834-3291312	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025408	chr8:2733604-3302447	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1033242	chr8:3283564-3304283	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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