Variant report

Variant	rs2701407
Chromosome Location	chr15:87538576-87538577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1010419	0.90[ASN][1000 genomes]
rs11073689	0.85[ASN][1000 genomes]
rs1368624	0.88[ASN][1000 genomes]
rs1433453	0.88[ASN][1000 genomes]
rs1836083	0.86[ASN][1000 genomes]
rs1897661	0.84[ASN][1000 genomes]
rs2043380	0.86[ASN][1000 genomes]
rs2570123	0.86[ASN][1000 genomes]
rs2570128	0.86[ASN][1000 genomes]
rs2570130	0.83[ASN][1000 genomes]
rs2594328	0.88[ASN][1000 genomes]
rs2594329	0.91[ASN][1000 genomes]
rs2594330	0.93[ASN][1000 genomes]
rs2701394	0.87[ASN][1000 genomes]
rs2701397	0.85[ASN][1000 genomes]
rs2701405	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2701406	0.93[ASN][1000 genomes]
rs2701408	0.94[ASN][1000 genomes]
rs2701415	0.83[ASN][1000 genomes]
rs4533254	0.85[ASN][1000 genomes]
rs7177132	0.85[ASN][1000 genomes]
rs7182264	0.84[ASN][1000 genomes]
rs9921009	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv533986	chr15:87100872-87633926	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87521800-87540600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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