Variant report

Variant	rs2701687
Chromosome Location	chr7:107304628-107304629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107302999..107305030-chr7:107306145..107307910,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1015411	0.86[CEU][hapmap]
rs10258385	0.91[CEU][hapmap]
rs10267907	0.86[CEU][hapmap]
rs10273733	0.91[CEU][hapmap]
rs10274041	0.91[CEU][hapmap]
rs10276604	0.91[CEU][hapmap]
rs10281535	0.91[CEU][hapmap]
rs11771278	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11977187	0.91[CEU][hapmap]
rs12673675	0.86[CEU][hapmap]
rs13228252	0.88[ASN][1000 genomes]
rs2057837	0.91[CEU][hapmap]
rs2066735	0.86[CEU][hapmap]
rs2107713	0.91[CEU][hapmap]
rs2178497	0.91[CEU][hapmap];0.81[TSI][hapmap]
rs2237677	0.86[CEU][hapmap]
rs2248465	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs2253146	0.86[CEU][hapmap]
rs2253269	0.82[CEU][hapmap]
rs2253271	0.86[CEU][hapmap]
rs2395907	0.91[CEU][hapmap]
rs2520241	0.86[CEU][hapmap]
rs2520242	0.86[CEU][hapmap]
rs2520243	0.82[CEU][hapmap]
rs2520245	0.82[CEU][hapmap]
rs2520249	0.86[CEU][hapmap]
rs2520268	0.91[CEU][hapmap]
rs2520269	0.82[CEU][hapmap]
rs2701678	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2701679	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2701684	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701685	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2712201	0.86[CEU][hapmap]
rs2712227	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2712228	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2712229	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2808	0.91[CEU][hapmap]
rs2894466	0.91[CEU][hapmap]
rs2894475	0.91[CEU][hapmap]
rs3094383	0.86[CEU][hapmap]
rs3801944	0.91[CEU][hapmap]
rs3801948	0.91[CEU][hapmap]
rs4727684	0.91[CEU][hapmap]
rs6976607	0.91[CEU][hapmap]
rs7778250	0.91[CEU][hapmap]
rs7778270	0.91[CEU][hapmap]
rs7793613	0.91[CEU][hapmap]
rs7803102	0.91[CEU][hapmap]
rs9691795	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2701687	BCAP29	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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