Variant report

Variant	rs2702477
Chromosome Location	chr8:35998899-35998900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:35018612..35019300-chr8:35998668..35999178,2	MCF-7	breast:
2	chr8:35744346..35744912-chr8:35998590..35999359,2	MCF-7	breast:
3	chr8:35993182..35994756-chr8:35996509..35999089,2	K562	blood:
4	chr8:35009843..35010391-chr8:35998408..35998917,2	MCF-7	breast:
5	chr8:35998628..35999297-chr8:36630776..36631627,3	MCF-7	breast:
6	chr8:35296451..35297364-chr8:35998554..35999313,2	MCF-7	breast:
7	chr8:35452680..35453282-chr8:35998615..35999410,2	MCF-7	breast:
8	chr8:35009829..35010450-chr8:35998446..35999665,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1116486	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11992518	0.98[EUR][1000 genomes]
rs13263200	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032081	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032082	0.86[EUR][1000 genomes]
rs2507728	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2702476	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2702501	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2702507	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843916	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843920	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2843925	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2951810	0.86[EUR][1000 genomes]
rs2951811	0.86[EUR][1000 genomes]
rs2979561	0.84[ASN][1000 genomes]
rs3015794	0.86[EUR][1000 genomes]
rs3015795	0.83[EUR][1000 genomes]
rs7459610	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35995000-36005400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:35998400-35999200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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