Variant report

Variant	rs2705535
Chromosome Location	chr3:112208927-112208928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1155073	0.87[ASN][1000 genomes]
rs1398091	0.92[JPT][hapmap]
rs1488259	0.87[ASN][1000 genomes]
rs1533159	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1601852	0.87[ASN][1000 genomes]
rs1814052	0.87[ASN][1000 genomes]
rs1844089	0.81[CHB][hapmap]
rs1873572	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2171513	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2171514	0.87[ASN][1000 genomes]
rs2633556	0.94[ASN][1000 genomes]
rs2633557	0.94[ASN][1000 genomes]
rs2633560	0.88[ASN][1000 genomes]
rs2633562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2633563	0.90[ASN][1000 genomes]
rs2633574	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2633575	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2633579	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2633582	0.81[CHB][hapmap]
rs2633588	0.87[ASN][1000 genomes]
rs2633589	0.87[ASN][1000 genomes]
rs2638013	0.87[ASN][1000 genomes]
rs2638015	0.87[ASN][1000 genomes]
rs2638016	0.81[CHB][hapmap]
rs2638017	0.81[CHB][hapmap]
rs2638019	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2638023	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2638026	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2638029	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2638032	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2638035	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2638039	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2705507	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2705519	0.82[ASN][1000 genomes]
rs2705521	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2705522	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2705525	0.87[ASN][1000 genomes]
rs2705533	1.00[ASN][1000 genomes]
rs2705536	1.00[ASN][1000 genomes]
rs2705541	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2705544	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2705548	0.85[ASN][1000 genomes]
rs2705552	0.85[ASN][1000 genomes]
rs2705555	0.90[ASN][1000 genomes]
rs2705556	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2705559	0.81[CHB][hapmap]
rs2705562	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2705565	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2705566	0.85[CHB][hapmap]
rs2933134	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2933135	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2952319	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2952323	0.81[CHB][hapmap]
rs2952324	0.82[ASN][1000 genomes]
rs2952325	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2952326	0.81[CHB][hapmap]
rs2952327	0.81[CHB][hapmap]
rs2969895	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2969896	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2971204	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2971205	0.81[ASN][1000 genomes]
rs3112268	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs728568	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9869455	0.85[JPT][hapmap]
rs9869579	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs998036	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1005323	chr3:112171990-112274613	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv963487	chr3:112204269-112213816	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112194200-112214000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:112200400-112214800	Weak transcription	Fetal Thymus	thymus
3	chr3:112200600-112217000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:112201400-112215600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:112206400-112210400	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr3:112206400-112214000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:112206800-112209000	Genic enhancers	Primary B cells from cord blood	blood
8	chr3:112207600-112209800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:112207800-112214000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:112207800-112214000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:112208000-112209400	Enhancers	Primary T cells from cord blood	blood
12	chr3:112208600-112209000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:112208600-112211000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr3:112208600-112212600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:112208600-112212600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:112208600-112212600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:112208800-112209000	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr3:112208800-112209000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:112208800-112209000	Flanking Active TSS	GM12878-XiMat	blood
20	chr3:112208800-112209400	Weak transcription	Thymus	Thymus
21	chr3:112208800-112209600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr3:112208800-112212400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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