Variant report

Variant	rs2705507
Chromosome Location	chr3:112279710-112279711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr3:112279682-112280170	Hela-S3	cervix:	n/a	n/a
2	NFIC	chr3:112279693-112281548	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:112279610-112281668	U87	brain:	n/a	n/a
4	MXI1	chr3:112279681-112281770	GM12878	blood:	n/a	n/a
5	USF2	chr3:112279646-112281456	Hela-S3	cervix:	n/a	chr3:112280795-112280808 chr3:112280819-112280828 chr3:112280797-112280806 chr3:112280798-112280807 chr3:112280820-112280829 chr3:112280796-112280807 chr3:112280819-112280830 chr3:112280821-112280830 chr3:112280820-112280829 chr3:112280818-112280831 chr3:112280797-112280806
6	MXI1	chr3:112279150-112282285	SK-N-SH	brain:	n/a	n/a
7	BCLAF1	chr3:112279687-112281617	GM12878	blood:	n/a	chr3:112280274-112280282 chr3:112280841-112280854
8	PML	chr3:112279648-112281767	GM12878	blood:	n/a	n/a
9	MAZ	chr3:112279706-112281716	IMR90	lung:	n/a	chr3:112280797-112280806 chr3:112280979-112280989 chr3:112280820-112280829
10	HCFC1	chr3:112279705-112281402	K562	blood:	n/a	n/a
11	POLR2A	chr3:112279700-112281551	HepG2	liver:	n/a	n/a
12	POLR2A	chr3:112279418-112281590	IMR90	lung:	n/a	n/a
13	POLR2A	chr3:112279699-112281513	GM18526	blood:	n/a	n/a
14	GATA1	chr3:112279309-112281649	PBDE	blood:	n/a	chr3:112279695-112279712 chr3:112279687-112279708 chr3:112281582-112281592 chr3:112281585-112281592 chr3:112280220-112280231
15	CREB1	chr3:112279622-112281504	K562	blood:	n/a	n/a
16	POLR2A	chr3:112279708-112281608	GM12878	blood:	n/a	n/a
17	POLR2A	chr3:112279604-112281674	U87	brain:	n/a	n/a
18	SIN3A	chr3:112279654-112281671	H1-hESC	embryonic stem cell:	n/a	chr3:112280275-112280284
19	TBL1XR1	chr3:112279672-112280246	K562	blood:	n/a	n/a
20	TEAD4	chr3:112279534-112280046	K562	blood:	n/a	n/a
21	POLR2A	chr3:112279612-112281621	PBDE	blood:	n/a	n/a
22	HCFC1	chr3:112279233-112281577	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr3:112279567-112281648	GM12878	blood:	n/a	n/a
24	POLR2A	chr3:112279658-112281634	GM12878	blood:	n/a	n/a
25	WRNIP1	chr3:112279699-112280320	GM12878	blood:	n/a	n/a
26	CREB1	chr3:112279637-112281498	GM12878	blood:	n/a	n/a
27	POLR2A	chr3:112279667-112281633	GM12892	blood:	n/a	n/a
28	POLR2A	chr3:112279710-112281538	Hela-S3	cervix:	n/a	n/a
29	TAL1	chr3:112279604-112279950	K562	blood:	n/a	chr3:112279694-112279712
30	ELF1	chr3:112279637-112281568	HCT-116	colon:	n/a	n/a
31	MAZ	chr3:112279670-112281522	K562	blood:	n/a	chr3:112280797-112280806 chr3:112280979-112280989 chr3:112280820-112280829
32	REST	chr3:112279648-112281640	H1-neurons	neurons:	n/a	chr3:112280275-112280285
33	MYC	chr3:112279581-112279773	MCF10A-Er-Src	breast:	n/a	n/a
34	CREB1	chr3:112279633-112281615	GM12878	blood:	n/a	n/a
35	POLR2A	chr3:112279653-112281582	GM12891	blood:	n/a	n/a
36	POLR2A	chr3:112279656-112281572	GM12892	blood:	n/a	n/a
37	RCOR1	chr3:112279682-112279840	K562	blood:	n/a	n/a
38	CREB1	chr3:112279650-112281547	HepG2	liver:	n/a	n/a
39	IRF1	chr3:112279686-112281421	K562	blood:	n/a	chr3:112279867-112279874 chr3:112281286-112281298
40	EP300	chr3:112279655-112280313	K562	blood:	n/a	n/a
41	SIN3AK20	chr3:112279654-112281684	MCF-7	breast:	n/a	n/a
42	CREB1	chr3:112279639-112281507	H1-hESC	embryonic stem cell:	n/a	n/a
43	NR2F2	chr3:112279612-112280151	K562	blood:	n/a	chr3:112279903-112279918
44	SRF	chr3:112279708-112281599	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:73150272..73150774-chr3:112279377..112280194,2	Hela-S3	cervix:
2	chr3:112278908..112280422-chr3:112332975..112334877,2	MCF-7	breast:
3	chr3:112279230..112281440-chr3:112358030..112362501,6	K562	blood:
4	chr3:111697752..111700080-chr3:112279042..112280721,2	K562	blood:
5	chr3:112279683..112282381-chr3:112710182..112712390,2	K562	blood:
6	chr3:111803332..111805315-chr3:112279253..112281220,2	MCF-7	breast:
7	chr3:112279172..112282504-chr3:112358640..112361542,6	MCF-7	breast:
8	chr3:112277732..112280310-chr3:112708635..112710146,2	K562	blood:
9	chr3:112279230..112282432-chr3:112358112..112361671,5	K562	blood:
10	chr3:112253490..112256363-chr3:112279039..112281187,3	K562	blood:
11	chr3:112278745..112284115-chr3:112357887..112361363,11	MCF-7	breast:
12	chr3:111830456..111832040-chr3:112279153..112281688,2	K562	blood:
13	chr3:112279637..112281423-chr3:113232414..113235211,2	K562	blood:
14	chr3:112257078..112259281-chr3:112279236..112282506,3	MCF-7	breast:
15	chr3:112272255..112274870-chr3:112277581..112280165,3	K562	blood:

Variant related genes	Relation type
SLC35A5	TF binding region
ENSG00000144827	Chromatin interaction
ENSG00000189159	Chromatin interaction
ENSG00000163607	Chromatin interaction
ENSG00000272844	Chromatin interaction
ENSG00000144848	Chromatin interaction
ENSG00000114529	Chromatin interaction
ENSG00000207940	Chromatin interaction
ENSG00000163611	Chromatin interaction
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1105938	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1155073	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12632867	0.81[CHB][hapmap]
rs1386895	0.81[CHB][hapmap]
rs1398091	0.81[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs1488259	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1512006	0.86[GIH][hapmap]
rs1533159	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1601852	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1814052	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1844089	0.81[CHB][hapmap]
rs1873571	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs1873572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1877363	0.86[GIH][hapmap]
rs2171513	0.86[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs2171514	0.89[ASN][1000 genomes]
rs2292442	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2633562	0.84[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2633574	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2633575	0.89[ASN][1000 genomes]
rs2633578	0.81[CHB][hapmap]
rs2633579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2633580	0.81[CHB][hapmap]
rs2633582	0.81[CHB][hapmap]
rs2633588	0.89[ASN][1000 genomes]
rs2633589	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2638013	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2638015	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2638016	0.81[CHB][hapmap]
rs2638017	0.81[CHB][hapmap]
rs2638019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2638022	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs2638023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2638026	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2638027	0.81[AMR][1000 genomes]
rs2638028	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2638029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2638031	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs2638032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2638035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2638037	0.81[CHB][hapmap];0.90[GIH][hapmap]
rs2638039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2668215	0.89[AMR][1000 genomes]
rs2668219	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705505	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2705515	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705518	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2705521	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2705522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2705525	0.89[ASN][1000 genomes]
rs2705534	0.81[CHB][hapmap]
rs2705535	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2705541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2705544	0.86[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap]
rs2705548	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2705552	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2705556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2705559	0.81[CHB][hapmap]
rs2705560	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2705564	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2705565	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2705566	0.85[CHB][hapmap]
rs2933134	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2933135	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2933137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2942061	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2952319	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2952320	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2952323	0.81[CHB][hapmap]
rs2952324	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2952325	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2952326	0.81[CHB][hapmap]
rs2952327	0.81[CHB][hapmap]
rs2969895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2969896	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2971204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs3112268	0.88[ASN][1000 genomes]
rs6792947	0.86[GIH][hapmap]
rs728568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751875	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs766968	0.86[GIH][hapmap]
rs766969	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9869455	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9869579	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs998036	0.83[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv591301	chr3:112252532-112332629	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2705507	SLC35A5	cis	lymphoblastoid	seeQTL
rs2705507	SLC35A5	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112249200-112279800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:112276400-112279800	Weak transcription	Spleen	Spleen
3	chr3:112278200-112279800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:112278200-112280000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr3:112278200-112280800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:112278200-112282000	Active TSS	K562	blood
7	chr3:112278200-112282200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:112278400-112279800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:112278400-112279800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:112278400-112279800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr3:112278400-112279800	Flanking Active TSS	HUVEC	blood vessel
12	chr3:112278400-112280000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr3:112278400-112280000	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr3:112278400-112280000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:112278400-112282200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:112278600-112280000	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr3:112278600-112282400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:112278600-112283800	Active TSS	H1 Cell Line	embryonic stem cell
19	chr3:112278800-112280000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr3:112278800-112280800	Active TSS	Right Atrium	heart
21	chr3:112278800-112281600	Active TSS	Fetal Thymus	thymus
22	chr3:112278800-112281800	Active TSS	Thymus	Thymus
23	chr3:112278800-112282000	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr3:112278800-112282000	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr3:112278800-112282000	Active TSS	HSMM	muscle
26	chr3:112278800-112282200	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr3:112278800-112282200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:112278800-112282200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:112278800-112282200	Active TSS	Psoas Muscle	Psoas
30	chr3:112279000-112279800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr3:112279000-112279800	Flanking Active TSS	Liver	Liver
32	chr3:112279000-112279800	Flanking Active TSS	Dnd41	blood
33	chr3:112279000-112279800	Active TSS	HepG2	liver
34	chr3:112279000-112280200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:112279000-112282000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:112279000-112282000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:112279000-112282000	Active TSS	Muscle Satellite Cultured Cells	--
38	chr3:112279000-112282000	Active TSS	Fetal Intestine Large	intestine
39	chr3:112279000-112282000	Active TSS	Fetal Intestine Small	intestine
40	chr3:112279000-112282000	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr3:112279000-112282000	Active TSS	GM12878-XiMat	blood
42	chr3:112279000-112282000	Active TSS	HMEC	breast
43	chr3:112279000-112282200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:112279000-112282200	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr3:112279000-112282200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr3:112279000-112282200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:112279000-112282400	Active TSS	NHLF	lung
48	chr3:112279000-112282600	Active TSS	NHDF-Ad	bronchial
49	chr3:112279200-112279800	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr3:112279200-112279800	Flanking Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links