Variant report

Variant	rs2710373
Chromosome Location	chr22:32942352-32942353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32936212..32939434-chr22:32941471..32944860,3	MCF-7	breast:
2	chr22:32926848..32928451-chr22:32942229..32944126,2	MCF-7	breast:
3	chr22:32928261..32930206-chr22:32941848..32945247,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs130448	0.80[CHD][hapmap]
rs130458	0.85[JPT][hapmap]
rs13055961	0.81[CHB][hapmap]
rs2710376	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4821072	0.90[ASN][1000 genomes]
rs5749458	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5749459	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5754135	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs5754136	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5754141	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5754143	0.96[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58033264	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs762907	0.83[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2710373	CABP7	cis	parietal	SCAN
rs2710373	PLA2G3	cis	parietal	SCAN
rs2710373	XBP1	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32935200-32942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:32939200-32942400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr22:32939200-32942400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr22:32939200-32943000	Weak transcription	Spleen	Spleen
5	chr22:32939400-32942400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr22:32939800-32942400	Weak transcription	Left Ventricle	heart
7	chr22:32939800-32949000	Weak transcription	Lung	lung
8	chr22:32940400-32942400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:32940800-32942400	Enhancers	NHLF	lung
10	chr22:32940800-32943000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr22:32940800-32943000	Enhancers	Osteobl	bone
12	chr22:32940800-32943200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr22:32940800-32943400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr22:32940800-32944000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr22:32941000-32942400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr22:32941000-32942400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr22:32941000-32942800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:32941000-32943200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr22:32941000-32943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr22:32941000-32943800	Enhancers	Ovary	ovary
21	chr22:32941200-32942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr22:32941200-32943400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr22:32941400-32943000	Enhancers	HepG2	liver
24	chr22:32941400-32943200	Enhancers	NHEK	skin
25	chr22:32941400-32943800	Enhancers	Hela-S3	cervix
26	chr22:32941400-32944000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr22:32941800-32943800	Enhancers	Adipose Nuclei	Adipose
28	chr22:32942000-32942600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr22:32942000-32942600	Enhancers	HMEC	breast
30	chr22:32942000-32942800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr22:32942000-32943200	Enhancers	Liver	Liver
32	chr22:32942000-32943800	Enhancers	Right Atrium	heart
33	chr22:32942000-32944000	Enhancers	Fetal Lung	lung
34	chr22:32942200-32942800	Enhancers	K562	blood
35	chr22:32942200-32943200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr22:32942200-32943200	Enhancers	Fetal Stomach	stomach
37	chr22:32942200-32943800	Enhancers	Placenta	Placenta

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