Variant report

Variant	rs5754136
Chromosome Location	chr22:32935333-32935334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32933708..32937841-chr22:33196276..33199119,4	MCF-7	breast:
2	chr22:32928103..32930722-chr22:32934980..32936586,2	MCF-7	breast:
3	chr22:32926204..32927722-chr22:32933778..32935343,2	MCF-7	breast:
4	chr22:32927446..32930330-chr22:32933647..32935342,2	MCF-7	breast:
5	chr22:32934249..32936537-chr22:32956952..32958878,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13055961	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2710373	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2710376	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4507	0.90[ASN][1000 genomes]
rs4821072	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5749458	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5749459	0.85[ASN][1000 genomes]
rs5754135	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754141	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754143	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58033264	0.84[ASN][1000 genomes]
rs762907	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914981	chr22:32912277-32940660	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32928400-32935800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr22:32928400-32935800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr22:32928400-32937600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr22:32928600-32935600	Weak transcription	Fetal Intestine Large	intestine
5	chr22:32929000-32940800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:32929800-32935800	Weak transcription	Spleen	Spleen
7	chr22:32930800-32936200	Weak transcription	Colonic Mucosa	Colon
8	chr22:32931000-32935600	Weak transcription	Liver	Liver
9	chr22:32931000-32935800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr22:32931000-32936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32931000-32937800	Weak transcription	Pancreas	Pancrea
12	chr22:32931000-32938200	Weak transcription	Colon Smooth Muscle	Colon
13	chr22:32931000-32938200	Weak transcription	Gastric	stomach
14	chr22:32931200-32937800	Weak transcription	Fetal Lung	lung
15	chr22:32932200-32935400	Weak transcription	Placenta	Placenta
16	chr22:32932200-32935800	Weak transcription	Left Ventricle	heart
17	chr22:32932200-32935800	Weak transcription	Right Ventricle	heart
18	chr22:32932800-32937800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr22:32933800-32935400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr22:32934200-32942200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr22:32934400-32936800	Enhancers	HepG2	liver
22	chr22:32934400-32937200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr22:32934600-32936800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr22:32934800-32936600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr22:32934800-32937400	Enhancers	Hela-S3	cervix
26	chr22:32934800-32938400	Enhancers	Adipose Nuclei	Adipose
27	chr22:32934800-32939400	Enhancers	Fetal Muscle Leg	muscle
28	chr22:32935200-32935600	Enhancers	Fetal Heart	heart
29	chr22:32935200-32935600	Weak transcription	Right Atrium	heart
30	chr22:32935200-32935800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr22:32935200-32936600	Enhancers	K562	blood
32	chr22:32935200-32942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links