Variant report
| Variant | rs271043 |
|---|---|
| Chromosome Location | chr11:92727089-92727090 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10765576 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10765578 | 0.94[ASN][1000 genomes] |
| rs11020127 | 0.84[ASN][1000 genomes] |
| rs11020133 | 0.96[ASN][1000 genomes] |
| rs12792653 | 0.94[ASN][1000 genomes] |
| rs1447350 | 0.95[ASN][1000 genomes] |
| rs1447351 | 0.95[ASN][1000 genomes] |
| rs1447352 | 0.96[ASN][1000 genomes] |
| rs1447353 | 0.96[ASN][1000 genomes] |
| rs1562444 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1597023 | 0.94[ASN][1000 genomes] |
| rs1971186 | 0.96[ASN][1000 genomes] |
| rs3781638 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4237554 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4237555 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4406791 | 0.95[ASN][1000 genomes] |
| rs4611171 | 0.95[ASN][1000 genomes] |
| rs4612758 | 0.95[ASN][1000 genomes] |
| rs4753072 | 0.94[ASN][1000 genomes] |
| rs4753073 | 0.94[ASN][1000 genomes] |
| rs4753426 | 0.84[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4753428 | 0.95[ASN][1000 genomes] |
| rs6483212 | 0.95[ASN][1000 genomes] |
| rs6483213 | 0.95[ASN][1000 genomes] |
| rs7121092 | 0.94[ASN][1000 genomes] |
| rs7930067 | 0.95[ASN][1000 genomes] |
| rs7930592 | 0.95[ASN][1000 genomes] |
| rs7951037 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs9666388 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9666752 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044571 | chr11:92495213-92742314 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv555903 | chr11:92640787-92877533 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv555904 | chr11:92640787-92881933 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv820151 | chr11:92718283-92738795 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1048275 | chr11:92719681-92795212 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:92713800-92734000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
