Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10765576	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs10765578	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11020127	0.96[ASN][1000 genomes]
rs11020133	0.86[ASN][1000 genomes]
rs12792653	0.86[ASN][1000 genomes]
rs1447350	0.87[ASN][1000 genomes]
rs1447351	0.87[ASN][1000 genomes]
rs1447352	0.86[ASN][1000 genomes]
rs1447353	0.86[ASN][1000 genomes]
rs1562444	0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs1597023	0.86[ASN][1000 genomes]
rs1971186	0.86[ASN][1000 genomes]
rs271043	0.82[ASN][1000 genomes]
rs3781638	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4237554	0.87[ASN][1000 genomes]
rs4237555	0.86[ASN][1000 genomes]
rs4406791	0.87[ASN][1000 genomes]
rs4611171	0.87[ASN][1000 genomes]
rs4612758	0.87[ASN][1000 genomes]
rs4753072	0.86[ASN][1000 genomes]
rs4753073	0.86[ASN][1000 genomes]
rs4753428	0.87[ASN][1000 genomes]
rs6483212	0.87[ASN][1000 genomes]
rs6483213	0.87[ASN][1000 genomes]
rs7121092	0.84[ASN][1000 genomes]
rs7930067	0.87[ASN][1000 genomes]
rs7930592	0.87[ASN][1000 genomes]
rs7951037	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[ASN][1000 genomes]
rs9666388	0.84[ASN][1000 genomes]
rs9666752	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92698000-92702600	Weak transcription	Gastric	stomach

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