Variant report

Variant	rs2712596
Chromosome Location	chr12:46012817-46012818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11183137	0.97[ASN][1000 genomes]
rs2544081	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2544083	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2712590	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712591	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2712592	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712593	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2712594	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2712598	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712599	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712600	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2712601	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2712602	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60079481	1.00[ASN][1000 genomes]
rs7137500	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7294982	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv983462	chr12:46008670-46015543	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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