Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10170462	0.88[CEU][hapmap]
rs10186346	0.88[CEU][hapmap]
rs10207589	0.82[CHB][hapmap]
rs13401182	0.84[EUR][1000 genomes]
rs1861243	0.81[AMR][1000 genomes]
rs1861244	0.88[CEU][hapmap]
rs1978327	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2058618	0.83[CEU][hapmap]
rs2160198	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2160199	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2192686	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2215958	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2241115	0.83[JPT][hapmap]
rs2540228	0.82[AMR][1000 genomes]
rs2540229	0.88[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2540235	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2540247	0.88[CEU][hapmap]
rs2540255	0.87[CEU][hapmap]
rs2716681	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2716694	0.88[CEU][hapmap]
rs2716704	0.80[EUR][1000 genomes]
rs4365444	0.83[EUR][1000 genomes]
rs4644998	0.83[EUR][1000 genomes]
rs6722610	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7590912	0.81[JPT][hapmap]
rs8265	0.82[CHB][hapmap]
rs917961	0.81[JPT][hapmap]
rs917964	0.88[CEU][hapmap]
rs949812	0.88[CEU][hapmap]
rs949813	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39914200-39926800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:39923600-39926200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:39923600-39935200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:39924200-39926000	Enhancers	Fetal Heart	heart
5	chr2:39924800-39926000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:39925000-39957600	Weak transcription	Fetal Stomach	stomach
7	chr2:39925200-39926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:39925200-39950000	Weak transcription	Left Ventricle	heart
9	chr2:39925400-39929000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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