Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10206408	0.83[AMR][1000 genomes]
rs11124691	0.82[AMR][1000 genomes]
rs12623462	0.82[AMR][1000 genomes]
rs12623545	0.83[AMR][1000 genomes]
rs13401182	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17024145	0.83[CEU][hapmap]
rs1978327	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2160198	0.88[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2160199	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2192686	0.83[EUR][1000 genomes]
rs2373688	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2716681	0.83[EUR][1000 genomes]
rs2716699	0.83[EUR][1000 genomes]
rs2716704	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3902124	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4365444	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670957	0.83[AMR][1000 genomes]
rs4670958	0.83[AMR][1000 genomes]
rs7565954	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7581406	0.83[AMR][1000 genomes]
rs917963	0.82[AMR][1000 genomes]
rs962262	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39923600-39935200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:39925000-39957600	Weak transcription	Fetal Stomach	stomach
3	chr2:39925200-39950000	Weak transcription	Left Ventricle	heart
4	chr2:39925400-39929000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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