Variant report

Variant	rs2717346
Chromosome Location	chr7:19038377-19038378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2023937	1.00[ASN][1000 genomes]
rs2526616	0.85[AFR][1000 genomes]
rs2526628	1.00[AMR][1000 genomes]
rs2717367	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19033800-19038800	Weak transcription	Placenta	Placenta
4	chr7:19034800-19041200	Weak transcription	HSMM	muscle
5	chr7:19035800-19041000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:19036000-19041400	Weak transcription	Adipose Nuclei	Adipose
7	chr7:19036000-19053400	Weak transcription	HSMMtube	muscle
8	chr7:19036000-19055800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:19036200-19038800	Enhancers	NHDF-Ad	bronchial
10	chr7:19036200-19040800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:19036200-19040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:19036200-19041000	Weak transcription	Osteobl	bone
13	chr7:19036600-19048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:19036800-19040800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:19037600-19041200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:19037800-19038400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:19037800-19038400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:19038000-19038400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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