Variant report

Variant	rs2023937
Chromosome Location	chr7:19037051-19037052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10241964	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10245779	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10255384	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11984041	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2023938	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2526619	0.82[EUR][1000 genomes]
rs2717334	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2717346	1.00[ASN][1000 genomes]
rs28688791	0.81[AFR][1000 genomes]
rs28727433	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59111453	0.92[AMR][1000 genomes]
rs7783974	0.92[AMR][1000 genomes]
rs7784712	0.84[AMR][1000 genomes]
rs7788972	0.81[YRI][hapmap]
rs7792656	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19033000-19038000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:19033800-19038800	Weak transcription	Placenta	Placenta
5	chr7:19034800-19041200	Weak transcription	HSMM	muscle
6	chr7:19035800-19041000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:19036000-19041400	Weak transcription	Adipose Nuclei	Adipose
8	chr7:19036000-19053400	Weak transcription	HSMMtube	muscle
9	chr7:19036000-19055800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:19036200-19038800	Enhancers	NHDF-Ad	bronchial
11	chr7:19036200-19040800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:19036200-19040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:19036200-19041000	Weak transcription	Osteobl	bone
14	chr7:19036600-19048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:19036800-19037600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:19036800-19037800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:19036800-19037800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:19036800-19037800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:19036800-19038000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:19036800-19040800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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