Variant report

Variant	rs28688791
Chromosome Location	chr7:19039605-19039606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10227612	0.81[CHD][hapmap];0.91[JPT][hapmap]
rs10241964	0.82[AFR][1000 genomes]
rs10245779	0.82[AFR][1000 genomes]
rs11984041	0.85[LWK][hapmap]
rs12530920	0.87[ASN][1000 genomes]
rs12670036	0.82[JPT][hapmap]
rs2023936	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2023937	0.81[AFR][1000 genomes]
rs2023938	0.88[LWK][hapmap]
rs2074633	0.94[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107595	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2526620	0.92[ASN][1000 genomes]
rs28727433	0.82[AFR][1000 genomes]
rs57301765	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7788833	0.95[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs7788972	0.87[CEU][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs7792656	0.90[AFR][1000 genomes]
rs7798197	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19034800-19041200	Weak transcription	HSMM	muscle
4	chr7:19035800-19041000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:19036000-19041400	Weak transcription	Adipose Nuclei	Adipose
6	chr7:19036000-19053400	Weak transcription	HSMMtube	muscle
7	chr7:19036000-19055800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:19036200-19040800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:19036200-19040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:19036200-19041000	Weak transcription	Osteobl	bone
11	chr7:19036600-19048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:19036800-19040800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:19037600-19041200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:19038800-19040000	Enhancers	Placenta	Placenta
15	chr7:19039600-19041000	Strong transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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