Variant report

Variant	rs12670036
Chromosome Location	chr7:19032243-19032244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10227612	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12672843	1.00[LWK][hapmap]
rs17140251	1.00[YRI][hapmap]
rs2074633	0.82[JPT][hapmap]
rs7788833	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7788972	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7806036	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19018800-19033600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:19019400-19034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:19030400-19034800	Weak transcription	Adipose Nuclei	Adipose
6	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:19031800-19035600	Weak transcription	Brain Germinal Matrix	brain
9	chr7:19032000-19033600	Weak transcription	NHDF-Ad	bronchial
10	chr7:19032000-19035000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:19032200-19035600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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