Variant report

Variant	rs7788972
Chromosome Location	chr7:19034280-19034281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10227612	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs12670036	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2023936	0.87[EUR][1000 genomes]
rs2023937	0.81[YRI][hapmap]
rs2074633	0.94[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs28688791	0.83[EUR][1000 genomes]
rs7788833	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798197	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19019400-19034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:19030400-19034800	Weak transcription	Adipose Nuclei	Adipose
5	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:19031800-19035600	Weak transcription	Brain Germinal Matrix	brain
8	chr7:19032000-19035000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:19032200-19035600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:19033000-19038000	Weak transcription	Primary B cells from cord blood	blood
11	chr7:19033600-19034400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:19033600-19035600	Enhancers	NHDF-Ad	bronchial
13	chr7:19033600-19035800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:19033800-19038800	Weak transcription	Placenta	Placenta
15	chr7:19034000-19035400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:19034000-19035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:19034000-19035600	Weak transcription	Osteobl	bone
18	chr7:19034200-19034600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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