Variant report

Variant	rs2074633
Chromosome Location	chr7:19035920-19035921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10227612	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs12530920	0.82[ASN][1000 genomes]
rs12670036	0.82[JPT][hapmap]
rs2023936	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2107595	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2526620	0.86[ASN][1000 genomes]
rs28688791	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57301765	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7788833	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs7788972	0.94[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs7798197	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19033000-19038000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:19033800-19038800	Weak transcription	Placenta	Placenta
5	chr7:19034800-19036000	Enhancers	Adipose Nuclei	Adipose
6	chr7:19034800-19036200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:19034800-19041200	Weak transcription	HSMM	muscle
8	chr7:19035000-19036000	Enhancers	Fetal Stomach	stomach
9	chr7:19035000-19036200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:19035200-19036200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:19035200-19036200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:19035200-19036400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:19035600-19036000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:19035600-19036000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:19035600-19036000	Enhancers	Brain Anterior Caudate	brain
16	chr7:19035600-19036000	Enhancers	Brain Germinal Matrix	brain
17	chr7:19035600-19036000	Enhancers	Fetal Brain Male	brain
18	chr7:19035600-19036000	Enhancers	HSMMtube	muscle
19	chr7:19035600-19036000	Enhancers	NH-A	brain
20	chr7:19035600-19036200	Enhancers	Osteobl	bone
21	chr7:19035600-19036600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:19035600-19036600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:19035600-19036600	Enhancers	Brain Hippocampus Middle	brain
24	chr7:19035600-19036800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr7:19035800-19036000	Enhancers	Stomach Smooth Muscle	stomach
26	chr7:19035800-19036000	Enhancers	NHDF-Ad	bronchial
27	chr7:19035800-19036200	Enhancers	NHLF	lung
28	chr7:19035800-19041000	Weak transcription	Muscle Satellite Cultured Cells	--

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