Variant report

Variant	rs12530920
Chromosome Location	chr7:19055797-19055798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12670036	0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12672843	1.00[LWK][hapmap]
rs17140251	1.00[YRI][hapmap]
rs2023936	0.87[ASN][1000 genomes]
rs2074633	0.81[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2107595	0.87[ASN][1000 genomes]
rs2526620	0.94[ASN][1000 genomes]
rs28688791	0.87[ASN][1000 genomes]
rs57301765	0.89[ASN][1000 genomes]
rs7798197	0.86[ASN][1000 genomes]
rs7806036	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19036000-19055800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:19049800-19055800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:19051200-19056000	Weak transcription	NHEK	skin
4	chr7:19051200-19060200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:19054800-19055800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:19055200-19056200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:19055400-19055800	Enhancers	NH-A	brain
8	chr7:19055400-19057000	ZNF genes & repeats	NHDF-Ad	bronchial
9	chr7:19055600-19056000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:19055600-19056000	Enhancers	Placenta	Placenta
11	chr7:19055600-19056400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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