Variant report

Variant	rs10255384
Chromosome Location	chr7:19055703-19055704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10241964	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10245779	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11984041	0.84[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13438248	1.00[CHD][hapmap]
rs2023937	0.83[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2023938	0.84[CEU][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2526619	0.87[EUR][1000 genomes]
rs2717334	0.86[EUR][1000 genomes]
rs28727433	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59111453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7783974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7784712	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7792656	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10255384	TOMM7	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19036000-19055800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:19049800-19055800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:19051200-19056000	Weak transcription	NHEK	skin
4	chr7:19051200-19060200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:19054800-19055800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:19055200-19056200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:19055400-19055800	Enhancers	NH-A	brain
8	chr7:19055400-19057000	ZNF genes & repeats	NHDF-Ad	bronchial
9	chr7:19055600-19056000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:19055600-19056000	Enhancers	Placenta	Placenta
11	chr7:19055600-19056400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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