Variant report

Variant	rs59111453
Chromosome Location	chr7:19060333-19060334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10241964	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10245779	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10255384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11984041	0.92[AMR][1000 genomes]
rs2023937	0.92[AMR][1000 genomes]
rs2023938	0.82[AMR][1000 genomes]
rs2526619	0.86[EUR][1000 genomes]
rs2717334	0.85[EUR][1000 genomes]
rs28727433	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7783974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7784712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792656	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19056000-19063600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:19056400-19061800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:19057000-19060800	Weak transcription	NHDF-Ad	bronchial
4	chr7:19059000-19061600	Enhancers	HMEC	breast
5	chr7:19059400-19061200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:19059400-19061400	Enhancers	NHEK	skin
7	chr7:19059800-19061000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:19059800-19061000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:19059800-19061000	Enhancers	HSMM	muscle
10	chr7:19059800-19061000	Enhancers	Osteobl	bone
11	chr7:19059800-19061200	Enhancers	NH-A	brain
12	chr7:19059800-19061400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:19060000-19060400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:19060000-19061000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:19060000-19061000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:19060200-19060600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:19060200-19060800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:19060200-19060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:19060200-19061000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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