Variant report

Variant	rs7783974
Chromosome Location	chr7:19059427-19059428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10241964	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10245779	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10255384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11984041	0.91[CEU][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes]
rs2023937	0.91[CEU][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes]
rs2023938	0.91[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs2526619	0.86[EUR][1000 genomes]
rs2717334	0.85[EUR][1000 genomes]
rs28727433	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59111453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7784712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792656	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19051200-19060200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:19055800-19059800	Weak transcription	NH-A	brain
3	chr7:19056000-19063600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:19056400-19061800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:19056600-19059800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:19057000-19060800	Weak transcription	NHDF-Ad	bronchial
7	chr7:19057200-19060200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:19057400-19059800	Weak transcription	HSMM	muscle
9	chr7:19058800-19060200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:19059000-19061600	Enhancers	HMEC	breast
11	chr7:19059400-19061200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:19059400-19061400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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