Variant report

Variant	rs2717514
Chromosome Location	chr2:37093687-37093688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1015599	1.00[EUR][1000 genomes]
rs1019311	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11124550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11892892	1.00[EUR][1000 genomes]
rs11896317	1.00[EUR][1000 genomes]
rs2110943	1.00[EUR][1000 genomes]
rs2160378	1.00[EUR][1000 genomes]
rs2247610	1.00[EUR][1000 genomes]
rs2254704	0.82[YRI][hapmap]
rs2540921	1.00[EUR][1000 genomes]
rs2540927	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2540928	1.00[EUR][1000 genomes]
rs2540932	1.00[EUR][1000 genomes]
rs2540934	1.00[YRI][hapmap]
rs2540935	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2540938	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2541003	1.00[EUR][1000 genomes]
rs2541005	1.00[EUR][1000 genomes]
rs2691103	1.00[EUR][1000 genomes]
rs2691108	1.00[EUR][1000 genomes]
rs2691113	1.00[EUR][1000 genomes]
rs2691117	1.00[EUR][1000 genomes]
rs2691121	1.00[EUR][1000 genomes]
rs2706810	1.00[EUR][1000 genomes]
rs2706812	1.00[EUR][1000 genomes]
rs2706816	1.00[EUR][1000 genomes]
rs2717498	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717499	1.00[EUR][1000 genomes]
rs2717502	1.00[EUR][1000 genomes]
rs2717504	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2717506	1.00[EUR][1000 genomes]
rs2717513	1.00[EUR][1000 genomes]
rs2717515	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs2717517	1.00[EUR][1000 genomes]
rs2717521	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2949393	1.00[EUR][1000 genomes]
rs61085492	1.00[EUR][1000 genomes]
rs61561618	1.00[EUR][1000 genomes]
rs6708710	1.00[EUR][1000 genomes]
rs6734109	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs6738016	1.00[EUR][1000 genomes]
rs6750356	1.00[EUR][1000 genomes]
rs6758058	1.00[EUR][1000 genomes]
rs723674	1.00[EUR][1000 genomes]
rs73924930	1.00[EUR][1000 genomes]
rs73924969	1.00[EUR][1000 genomes]
rs73924971	1.00[EUR][1000 genomes]
rs7593630	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964853	0.82[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37062800-37095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:37065800-37104200	Weak transcription	Right Ventricle	heart
3	chr2:37067400-37103200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:37067600-37103000	Weak transcription	Small Intestine	intestine
5	chr2:37067600-37146200	Weak transcription	Psoas Muscle	Psoas
6	chr2:37068400-37095600	Weak transcription	Fetal Kidney	kidney
7	chr2:37073800-37098400	Weak transcription	Colonic Mucosa	Colon
8	chr2:37075600-37101600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:37075600-37139200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:37075800-37106600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:37076800-37111600	Weak transcription	Brain Germinal Matrix	brain
12	chr2:37077000-37102400	Weak transcription	Brain Angular Gyrus	brain
13	chr2:37077000-37102400	Weak transcription	Gastric	stomach
14	chr2:37077000-37116200	Weak transcription	Hela-S3	cervix
15	chr2:37077000-37116200	Weak transcription	NHLF	lung
16	chr2:37077200-37093800	Weak transcription	K562	blood
17	chr2:37077200-37094000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:37077200-37094200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:37077200-37102400	Weak transcription	Aorta	Aorta
20	chr2:37077200-37102400	Weak transcription	Pancreas	Pancrea
21	chr2:37077200-37144400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:37077400-37094000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr2:37077400-37136600	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:37078000-37094000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:37078000-37098600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr2:37078200-37118400	Weak transcription	Fetal Brain Male	brain
27	chr2:37079200-37111000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:37080600-37105800	Strong transcription	Primary B cells from cord blood	blood
29	chr2:37081600-37100200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:37082000-37093800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:37082200-37115600	Weak transcription	Stomach Mucosa	stomach
32	chr2:37083000-37094000	Weak transcription	Fetal Brain Female	brain
33	chr2:37083400-37097000	Strong transcription	Primary T cells from cord blood	blood
34	chr2:37083800-37108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr2:37084200-37094000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr2:37084200-37103200	Weak transcription	HSMMtube	muscle
37	chr2:37084400-37099000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr2:37084400-37102400	Weak transcription	Spleen	Spleen
39	chr2:37085200-37098400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr2:37085800-37093800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:37085800-37102000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr2:37086000-37094000	Weak transcription	NHEK	skin
43	chr2:37086000-37096400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr2:37086200-37094000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr2:37086200-37100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:37086400-37094000	Weak transcription	Fetal Thymus	thymus
47	chr2:37086400-37099400	Weak transcription	Ovary	ovary
48	chr2:37086400-37099400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:37086400-37103600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:37086600-37094000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links