Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25298470..25299852-chr7:25605228..25606576,11	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011967	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10232005	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10245962	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17151212	0.89[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1859210	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2523094	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2523096	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2523097	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2523098	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2523099	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2717874	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2717892	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2717893	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2717912	0.89[ASN][1000 genomes]
rs2717917	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2717918	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2717919	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2717920	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2717922	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55939158	0.80[ASN][1000 genomes]
rs56052727	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57002799	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7785870	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2717904	NFE2L3	cis	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25286400-25299200	Weak transcription	Fetal Kidney	kidney
2	chr7:25295200-25301000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:25295800-25301000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:25296000-25299600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:25296200-25299200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:25296200-25299200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:25296200-25299200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:25296200-25299200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:25296200-25300800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:25296400-25299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:25296400-25299200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:25296400-25299400	Weak transcription	Fetal Stomach	stomach
13	chr7:25296600-25299200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:25296600-25300400	Weak transcription	Fetal Brain Female	brain
15	chr7:25296800-25299200	Weak transcription	Fetal Heart	heart

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