Variant report

Variant	rs2717912
Chromosome Location	chr7:25274928-25274929
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1011967	0.86[ASN][1000 genomes]
rs10232005	0.93[ASN][1000 genomes]
rs10245962	0.93[ASN][1000 genomes]
rs17151212	0.96[CHD][hapmap];0.89[JPT][hapmap]
rs2523094	0.90[ASN][1000 genomes]
rs2523096	0.93[ASN][1000 genomes]
rs2523097	0.93[ASN][1000 genomes]
rs2523098	0.92[ASN][1000 genomes]
rs2523099	0.92[ASN][1000 genomes]
rs2717874	0.93[ASN][1000 genomes]
rs2717892	0.93[ASN][1000 genomes]
rs2717893	0.91[ASN][1000 genomes]
rs2717904	0.89[ASN][1000 genomes]
rs2717917	0.93[ASN][1000 genomes]
rs2717918	0.93[ASN][1000 genomes]
rs2717919	0.93[ASN][1000 genomes]
rs2717920	0.93[ASN][1000 genomes]
rs2717922	0.93[ASN][1000 genomes]
rs56052727	0.90[ASN][1000 genomes]
rs57002799	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv887845	chr7:25220519-25276424	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2717912	NFE2L3	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25274800-25275400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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