Variant report

Variant	rs2721375
Chromosome Location	chr7:120704289-120704290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120625882..120629039-chr7:120704026..120706565,3	K562	blood:
2	chr7:120701560..120707048-chr7:120714809..120721907,9	K562	blood:
3	chr7:120703590..120707044-chr7:120707756..120711872,8	K562	blood:

Variant related genes	Relation type
ENSG00000106034	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10228942	1.00[JPT][hapmap]
rs1024743	0.91[ASN][1000 genomes]
rs10248019	1.00[JPT][hapmap]
rs10268570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13221538	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13235373	1.00[JPT][hapmap]
rs17283542	1.00[JPT][hapmap]
rs2160013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2192289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215788	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402556	1.00[ASN][1000 genomes]
rs2402561	1.00[JPT][hapmap]
rs2538491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2538492	0.88[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2721349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2721374	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908572	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2908574	0.95[ASN][1000 genomes]
rs2968344	0.95[ASN][1000 genomes]
rs4140913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4144090	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6956851	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6962260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976513	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs759157	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7790569	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs798932	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs798937	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs798938	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs798939	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs798940	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs798947	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9641653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831114	chr7:120595624-120804510	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv608327	chr7:120633006-120873078	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2753621	chr7:120635049-120800049	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1023611	chr7:120638930-120881658	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1030792	chr7:120662815-120917533	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1031282	chr7:120667937-120887301	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv539099	chr7:120667937-120887301	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1019025	chr7:120667937-120918696	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv539100	chr7:120667937-120918696	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv534342	chr7:120667938-120887300	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv889118	chr7:120683751-120800837	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv889119	chr7:120688463-120800837	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv889120	chr7:120691417-120800837	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2721375	FLJ21986	cis	multi-tissue	Pritchard

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120682400-120719600	Weak transcription	Fetal Lung	lung
2	chr7:120687800-120706600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:120689600-120709400	Weak transcription	HSMMtube	muscle
4	chr7:120690200-120709000	Weak transcription	Right Ventricle	heart
5	chr7:120690200-120709400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:120690400-120704400	Weak transcription	NHDF-Ad	bronchial
7	chr7:120690400-120709000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:120690600-120709200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:120691200-120709000	Weak transcription	Adipose Nuclei	Adipose
10	chr7:120692800-120719000	Weak transcription	Left Ventricle	heart
11	chr7:120693000-120704400	Weak transcription	Fetal Stomach	stomach
12	chr7:120696600-120709400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:120696600-120709400	Weak transcription	NHLF	lung
14	chr7:120696800-120709200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:120701000-120704800	Strong transcription	HSMM	muscle
16	chr7:120701400-120704400	Strong transcription	K562	blood
17	chr7:120703400-120704400	Active TSS	Aorta	Aorta
18	chr7:120703400-120709000	Weak transcription	Osteobl	bone
19	chr7:120703600-120706200	Weak transcription	Liver	Liver
20	chr7:120704000-120704600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:120704000-120704600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr7:120704200-120704400	Active TSS	Fetal Kidney	kidney
23	chr7:120704200-120704400	Active TSS	Ovary	ovary
24	chr7:120704200-120704600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:120704200-120704600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr7:120704200-120704600	Enhancers	Colon Smooth Muscle	Colon
27	chr7:120704200-120704600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
28	chr7:120704200-120704600	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr7:120704200-120705000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr7:120704200-120716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links