Variant report

Variant	rs2725860
Chromosome Location	chr15:56620913-56620914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1426068	1.00[AMR][1000 genomes]
rs1520533	1.00[AMR][1000 genomes]
rs1863424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1863426	1.00[AMR][1000 genomes]
rs2718949	1.00[AMR][1000 genomes]
rs74015413	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56619400-56621400	Enhancers	Placenta	Placenta
3	chr15:56619600-56621200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:56619800-56621200	Enhancers	Esophagus	oesophagus
5	chr15:56620000-56621200	Enhancers	HMEC	breast
6	chr15:56620400-56621200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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