Variant report

Variant	rs74015413
Chromosome Location	chr15:56659787-56659788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56535922..56537613-chr15:56658440..56660656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1863424	0.82[AFR][1000 genomes]
rs2725860	0.84[AFR][1000 genomes]
rs28470906	1.00[AMR][1000 genomes]
rs28537630	1.00[AMR][1000 genomes]
rs28706019	1.00[AMR][1000 genomes]
rs28805049	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28831190	1.00[AMR][1000 genomes]
rs28893330	1.00[AMR][1000 genomes]
rs55690618	1.00[AMR][1000 genomes]
rs56046453	1.00[AMR][1000 genomes]
rs56214046	1.00[AMR][1000 genomes]
rs59956814	1.00[AMR][1000 genomes]
rs59966425	1.00[AMR][1000 genomes]
rs60403671	1.00[AMR][1000 genomes]
rs60421271	1.00[AMR][1000 genomes]
rs74015424	1.00[AMR][1000 genomes]
rs74015425	1.00[AMR][1000 genomes]
rs74015426	1.00[AMR][1000 genomes]
rs8035247	1.00[AMR][1000 genomes]
rs8042078	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56657200-56663200	Active TSS	GM12878-XiMat	blood
2	chr15:56657400-56659800	Active TSS	Duodenum Mucosa	Duodenum
3	chr15:56658000-56662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56658200-56659800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:56658200-56661400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:56658200-56661400	Weak transcription	Small Intestine	intestine
7	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
8	chr15:56658400-56659800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:56658400-56660000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:56658600-56660400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:56658800-56659800	Active TSS	Brain Anterior Caudate	brain
12	chr15:56658800-56659800	Enhancers	Hela-S3	cervix
13	chr15:56658800-56660000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:56658800-56661200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:56658800-56661200	Weak transcription	HMEC	breast
16	chr15:56658800-56661400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:56658800-56661400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:56658800-56661400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:56658800-56669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:56659000-56659800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:56659000-56659800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:56659000-56661400	Weak transcription	NHEK	skin
23	chr15:56659200-56659800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:56659400-56659800	Active TSS	Brain Germinal Matrix	brain
25	chr15:56659400-56666800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:56659600-56659800	Enhancers	Fetal Brain Female	brain
27	chr15:56659600-56659800	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr15:56659600-56661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:56659600-56661400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:56659600-56661400	Weak transcription	Fetal Brain Male	brain
31	chr15:56659600-56664000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:56659600-56675400	Weak transcription	Rectal Mucosa Donor 29	rectum

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